PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013650m
Common NameCICLE_v10013650mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 164aa    MW: 17975.9 Da    PI: 6.3548
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013650mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053456123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ Fs+   L  H++ H
  Ciclev10013650m 34 YTCAFCKRGFSNAQALGGHMNIH 56
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-63260No hitNo description
Gene3DG3DSA:3.30.160.601.3E-43258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1773461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
METNSQASSI EKSSQILWSS DDLDSSDSGH VKSYTCAFCK RGFSNAQALG GHMNIHRKDR  60
AKLRQFSEEN LLSLDIAKAA NPSIEAPNIV SEDRGAVILE SSVQEKICTP KSKEEKMTKQ  120
LGESSSSSSH IDQYLDLELR LGPEPREASA SRITKDLYRS SSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429146.11e-117hypothetical protein CICLE_v10013650mg
SwissprotQ9SR347e-21TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLV4SYU71e-117V4SYU7_9R
STRINGPOPTR_0006s09020.11e-31(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-21C2H2 family protein